The map expansion obtained with recombinant inbred strains and intermated recombinant inbred populations for finite generation designs.
نویسندگان
چکیده
The generation of special crosses between different inbred lines such as recombinant inbred strains (RIS) and intermated recombinant inbred populations (IRIP) is being used to improve the power of QTL detection techniques, in particular fine mapping. These approaches acknowledge the fact that recombination of linked loci increases with every generation, caused by the accumulation of crossovers appearing between the loci at each meiosis. This leads to an expansion of the map distance between the loci. While the amount of the map expansion of RIS and IRIP is known for infinite inbred generations, it is not known for finite numbers of generations. This gap was closed here. Since the recursive evaluation of the map expansion factors turned out to be complex, a useful approximation was derived.
منابع مشابه
Mapping QTLs for Agronomic Traits in Rice Under Water Stress Condition Using Iranian Recombinant Inbred Lines Population
In the current study, a set of 96 recombinant inbred lines (RIL) at F8, derived from a cross between two varieties, Anbarbu (sensitive to drought stress) and Sepidroud (tolerant to drought stress) were used. The experiment was performed at Gonbad Kavous located in the Golestan province of Iran in 2010–2011 using two augmented designs at normal and stress conditions, separately. The RIL populati...
متن کاملGenome-wide high-resolution mapping by recurrent intermating using Arabidopsis thaliana as a model.
We demonstrate a method for developing populations suitable for genome-wide high-resolution genetic linkage mapping, by recurrent intermating among F2 individuals derived from crosses between homozygous parents. Comparison of intermated progenies to F2 and "recombinant inbred" (RI) populations from the same pedigree corroborate theoretical expectations that progenies intermated for four generat...
متن کاملGenotype Probabilities at Intermediate Generations in the Construction of Recombinant Inbred Lines
The mouse Collaborative Cross (CC) is a panel of eight-way recombinant inbred lines: eight diverse parental strains are intermated, followed by repeated sibling mating, many times in parallel, to create a new set of inbred lines whose genomes are random mosaics of the genomes of the original eight strains. Many generations are required to reach inbreeding, and so a number of investigators have ...
متن کاملBreeding designs for recombinant inbred advanced intercross lines.
Recombinant inbred lines derived from an advanced intercross, in which multiple generations of mating have increased the density of recombination breakpoints, are powerful tools for mapping the loci underlying complex traits. We investigated the effects of intercross breeding designs on the utility of such lines for mapping. The simplest design, random pair mating with each pair contributing ex...
متن کاملHaplotype probabilities for multiple-strain recombinant inbred lines.
Recombinant inbred lines (RIL) derived from multiple inbred strains can serve as a powerful resource for the genetic dissection of complex traits. The use of such multiple-strain RIL requires a detailed knowledge of the haplotype structure in such lines. Broman (2005) derived the two- and three-point haplotype probabilities for 2(n)-way RIL; the former required hefty computation to infer the sy...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Genetics
دوره 170 2 شماره
صفحات -
تاریخ انتشار 2005